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Old 01-13-2011, 05:54 AM   #3
peveralldubois
Junior Member
 
Location: France

Join Date: Jan 2011
Posts: 5
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Hi Yilong,

Thanks so much for your reply.
I tried to run 'fakemut' from maq using this command.

Code:
maq fakemut chr22.fa > out.fakeref.fasta 2> out.fake.snp
Do you know what does each column means from "out.fake.snp"?
I can guess, but I am not quite sure.

I can't seem find any explanation about it from the web?

Code:
chr22   16051056        G       c       99
chr22   16054178        -       T       99
chr22   16055216        C       G       99
chr22   16056830        A       C       99
chr22   16056930        A       G       99
chr22   16057491        G       A       99
chr22   16058778        C       t       99
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