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peveralldubois · 01-13-2011, 05:54 AM

Hi Yilong,

Thanks so much for your reply.
I tried to run 'fakemut' from maq using this command.

Code:

maq fakemut chr22.fa > out.fakeref.fasta 2> out.fake.snp

Do you know what does each column means from "out.fake.snp"?
I can guess, but I am not quite sure.

I can't seem find any explanation about it from the web?

Code:

chr22   16051056        G       c       99
chr22   16054178        -       T       99
chr22   16055216        C       G       99
chr22   16056830        A       C       99
chr22   16056930        A       G       99
chr22   16057491        G       A       99
chr22   16058778        C       t       99

01-13-2011, 05:54 AM	#3
peveralldubois Junior Member Location: France Join Date: Jan 2011 Posts: 5	Hi Yilong, Thanks so much for your reply. I tried to run 'fakemut' from maq using this command. Code: maq fakemut chr22.fa > out.fakeref.fasta 2> out.fake.snp Do you know what does each column means from "out.fake.snp"? I can guess, but I am not quite sure. I can't seem find any explanation about it from the web? Code: chr22 16051056 G c 99 chr22 16054178 - T 99 chr22 16055216 C G 99 chr22 16056830 A C 99 chr22 16056930 A G 99 chr22 16057491 G A 99 chr22 16058778 C t 99