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byou678 · 10-07-2011, 09:08 AM

I installed DESeq (1.4.1) after running the codes below in R2.13.2.( to update all installed packages that are out of date)

source("http://bioconductor.org/biocLite.R")
update.packages(repos=biocinstallRepos(), ask=FALSE, checkBuilt=TRUE)

And it showed:
> library("DESeq")
Warning message:
'.readRDS' is deprecated.
Use 'readRDS' instead.
See help("Deprecated")

But it still cannot show me normalized and estimateDispersions by using ?estimateDispersions
> ?estimateDispersions
No documentation for 'estimateDispersions' in specified packages and libraries:
you could try '??estimateDispersions'

10-07-2011, 09:08 AM	#7
byou678 Member Location: Maryland Join Date: Aug 2011 Posts: 52	I installed DESeq (1.4.1) after running the codes below in R2.13.2.( to update all installed packages that are out of date) source("http://bioconductor.org/biocLite.R") update.packages(repos=biocinstallRepos(), ask=FALSE, checkBuilt=TRUE) And it showed: > library("DESeq") Warning message: '.readRDS' is deprecated. Use 'readRDS' instead. See help("Deprecated") But it still cannot show me normalized and estimateDispersions by using ?estimateDispersions > ?estimateDispersions No documentation for 'estimateDispersions' in specified packages and libraries: you could try '??estimateDispersions' Last edited by byou678; 10-07-2011 at 11:02 AM.