Thread: SOAPdenovo
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Old 06-17-2013, 01:08 PM   #7
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Location: NYC

Join Date: May 2013
Posts: 7

Originally Posted by Linnea View Post
Did you get "[LIB] command" not found? First I read "[LIB] not found" and interpreted it as SOAP didn't find the fastq file - I had that problem and it helped when I added the full path instead of "~"-annotation (changing ~/soap/file.fastq to /home/linnea/soap/file.fastq).
The format of the config file is quite strict, for example you are not allowed to have any extra blank lines in the end.

But if it says command not found it sounds like it's trying to run the config file or something.. What command did you use for starting SOAP?
Hi Lennea,
It actually said [LIB] not found. I used my mackbook to install the tools and it didn't work until I realized that it doesn't wrok on mac so I had to install Parallels so I can run Windows applications in my Mac. Problem was solved and I'm enjoying working on Parallels.
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