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Old 07-30-2017, 08:19 AM   #12
seqprone
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Location: USA

Join Date: Oct 2015
Posts: 8
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Quote:
Originally Posted by SDiehl View Post
In my case gzip was not the problem. For some strange reason it turned out the be the reference. After I redid the reference everything worked fine again.

As GenoMax already said, most likely you need to install gzip or add it to your path, such that tophat can find it.
Could you please explain how you 'redid the reference'? Thanks!
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