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Old 12-12-2018, 12:03 AM   #5
atpoint
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Location: Muenster

Join Date: Apr 2016
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Hmm, you have a peak as expected at 180bp and something that can be somekind of nucleosomal peak, but it indeed looks strange. Clearly not as expected. We did ATAC-seq in quiet a number of different cell (lines) and I can say that it typically comes down to the quality of the cells. Did you have excessive numbers of death cells? Did you do any modifications to the standard workflow?
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