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Old 11-12-2018, 01:35 AM   #4
Gopo
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Location: Louisiana

Join Date: Nov 2013
Posts: 38
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I am not sure I understand what you are trying to do. Are you trying to merge the mapped paired-end reads BAM file with the mapped single-end reads BAM file? Perhaps a newer version of Picard might help or perhaps using
Code:
samtools merge
?
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