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Old 11-01-2012, 08:01 AM   #5
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
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If your reads are overlapping significantly you may want to try this as an alternative to stitch the two ends together.

http://bioinformatics.oxfordjournals...tr507.full.pdf

Updated citation:

Tanja Magoč and Steven L. Salzberg

FLASH: fast length adjustment of short reads to improve genome assemblies Bioinformatics (2011) 27(21): 2957-2963

Last edited by GenoMax; 11-01-2012 at 08:04 AM.
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