Hi, I installed PROKKA pipeline for annotation of a bacterial genome. One of its dependencies is BioPerl, I installed this according to http://www.bioperl.org/wiki/Installing_BioPerl_on_Unix, the "preparating to install" and "installing using Built.PL" sections, never show me error, but when I run this pipeline, it show me:
This is the file "prokka", the bioperl section:
I think that not exist 1.006002 only 1.006.001,
I try to install again bioperl but it show the same. My laptop is Ubuntu 14.04, 64 bit. I installed prokka on a desktop computer (Ubuntu 12.04, 64 bits) and work very well!!!. I don't know, please help.
Thanks.
Code:
[11:12:56] This is prokka 1.8 [11:12:56] Written by Torsten Seemann <[email protected]> [11:12:56] Victorian Bioinformatics Consortium - http://www.vicbioinformatics.com [11:12:56] Local time is Fri Apr 25 11:12:56 2014 [11:12:56] You are dnl [11:12:56] Operating system is linux [11:12:56] You have BioPerl 1.006001 [11:12:56] Please install BioPerl 1.006002 or higher
Code:
# check BioPerl version my $minbpver = "1.006002"; # for Bio::SearcIO::hmmer3 my $bpver = $Bio::Root::Version::VERSION; msg("You have BioPerl $bpver"); err("Please install BioPerl $minbpver or higher") if $bpver < $minbpver;
I try to install again bioperl but it show the same. My laptop is Ubuntu 14.04, 64 bit. I installed prokka on a desktop computer (Ubuntu 12.04, 64 bits) and work very well!!!. I don't know, please help.
Thanks.
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