Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Human Body Map data?

    Hi,
    do you know where to find data from illumina's human body map project?
    I don't think there is anything publicly available, but just in case..
    thanks,
    s.

  • #2
    They are incorporated in the IGV (Integrative Genomics Viewer).

    Comment


    • #3
      Originally posted by yinshe View Post
      They are incorporated in the IGV (Integrative Genomics Viewer).
      Really! Do you have a link or resource to help explain that more?
      --
      bioinfosm

      Comment


      • #4
        Here is the link:

        Comment


        • #5
          Here is the link:



          The data is under hg18 genome.

          Comment


          • #6
            Originally posted by yinshe View Post
            They are incorporated in the IGV (Integrative Genomics Viewer).
            All I could find is hosted genomes: http://www.broadinstitute.org/igv/Genomes
            --
            bioinfosm

            Comment


            • #7
              I don´t know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".

              Comment


              • #8
                OK, i got it. Yinshe is right, you can download it from the IGV interface.

                Comment


                • #9
                  Originally posted by yinshe View Post
                  I don´t know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".
                  Oh thats what you meant. I can find it now. Thanks!
                  --
                  bioinfosm

                  Comment


                  • #10
                    It can also be downloaded without IGV:
                    /

                    -- update: not any more
                    Last edited by steven; 08-16-2011, 09:56 AM. Reason: That url should not be disclosed

                    Comment


                    • #11
                      Are there anyway we can download raw read or the raw alignment not the graphical one?

                      Comment


                      • #12
                        Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.

                        Comment


                        • #13
                          thank you very much Jim.

                          Comment


                          • #14
                            Originally posted by Jim Robinson View Post
                            Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.
                            Sorry Jim for having posted that information, I did not know I was not supposed to. I hope no harm was done.

                            Comment


                            • #15
                              I think it should be okay Steven. Your link is blocked for me and probably for others. I think you can remove that post to secure that no one can find the way to access it.

                              Comment

                              Latest Articles

                              Collapse

                              • seqadmin
                                Strategies for Sequencing Challenging Samples
                                by seqadmin


                                Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
                                03-22-2024, 06:39 AM
                              • seqadmin
                                Techniques and Challenges in Conservation Genomics
                                by seqadmin



                                The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

                                Avian Conservation
                                Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
                                03-08-2024, 10:41 AM

                              ad_right_rmr

                              Collapse

                              News

                              Collapse

                              Topics Statistics Last Post
                              Started by seqadmin, Yesterday, 06:37 PM
                              0 responses
                              10 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, Yesterday, 06:07 PM
                              0 responses
                              9 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, 03-22-2024, 10:03 AM
                              0 responses
                              51 views
                              0 likes
                              Last Post seqadmin  
                              Started by seqadmin, 03-21-2024, 07:32 AM
                              0 responses
                              67 views
                              0 likes
                              Last Post seqadmin  
                              Working...
                              X