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Old 04-01-2010, 11:15 AM   #1
clariet
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Location: NJ

Join Date: Mar 2010
Posts: 18
Default WIG input file for CEAS (Cis-regulatory Element Annotation System)

I am analyzing a ChIP-seq dataset and want to use CEAS. I have run MACS and got the multiple WIG files (one WIG file for each chromosome and each sample).

But as far as I understand, these WIG files include entire genome, not just peak regions. Anyone has used CEAS before? How could I get a WIG file for peaks identified in MACS?

Thanks a lot!

Clariet
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