Thread: SNP calling
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Old 12-29-2012, 05:28 AM   #9
Zam
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Location: Oxford

Join Date: Apr 2010
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Yes, it can call biallelic sites in polyploids. The genotyping models only handle haploid and diploid, so you will have to do discovery only, but the VCF will report coverage on both alleles, so you can post-process to interpret.
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