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Old 03-14-2014, 11:16 AM   #3
JenBarb
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Location: Bethesda, MD

Join Date: Oct 2010
Posts: 47
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ZWB, Thank you for your reply. We do not have the option for MiSeq. I am on the data processing end of our project but we are trying to determine the best cost/benefit ratio for the lab work. Apparently we have the option to use either Genome Analyzer or Ion Torrent. Do you know if we would be able to get species detail by sequencing the V3-V4 together? or if there are primers developed for that?
I have been reading up on QIIME but have not heard about UPARSE. I will have to check that out as well.
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