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Old 12-16-2014, 12:36 PM   #84
Brian Bushnell
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Location: Walnut Creek, CA

Join Date: Jan 2014
Posts: 2,707

22241069 reads were processed. Of those, 16273134 had adapter sequence detected, so they were trimmed. The output was 21270190 reads, which includes both trimmed reads (which had adapter detected) and untrimmed reads (which didn't). (22241069 - 21270190) = 970879 reads were discarded because after trimming, they were too short to use (default 10bp).

And that accounts for all the reads. Does that answer your question?
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