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Old 03-11-2011, 02:43 AM   #2
seqguy
Junior Member
 
Location: SK

Join Date: Oct 2010
Posts: 8
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Dear Lie

You have to rearrange tophat parameters to run it successfully. Tyr the below mentioned command:

./tophat -G <path to .gtf file> --color --quals <path to index folder/index prefix> <path to .csfasta file> <path to .qual file>
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