SEQanswers - View Single Post - number of read in RNA-seq?

CGarde · 08-16-2013, 06:10 AM

I don't mean to revive a closed thread, just in case someone needs to know the number of lines in multiple compressed fastq files...

for file in *.bz2; do echo $file; b=$(bzcat $file | wc -l); echo $(($b/4)); done;

08-16-2013, 06:10 AM	#10
CGarde Junior Member Location: Denmark Join Date: Aug 2013 Posts: 1	I don't mean to revive a closed thread, just in case someone needs to know the number of lines in multiple compressed fastq files... for file in *.bz2; do echo $file; b=$(bzcat $file \| wc -l); echo $(($b/4)); done;