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Old 08-28-2013, 01:23 AM   #6
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Location: Stuttgart, Germany

Join Date: Apr 2010
Posts: 192


I'd also say you should try do downsize your data to the most informative sites. To infer those maybe a good starting point is to use 'GenomeRing' (GenomeRing). It visualizes differences between genomes in a quite fancy way so you can easliy see at which regions you genomes differ. From there, you could extract the sites which differ in at least say 2 genomes. And infer a phylogeny on only those sites giving you at least an idea whats going on in a phylogentic manner.

Best phil

Last edited by sphil; 08-28-2013 at 01:25 AM.
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