View Single Post
Old 09-24-2013, 09:25 AM   #3
JackMetal
Junior Member
 
Location: Auburn, AL

Join Date: May 2012
Posts: 8
Default

Quote:
Originally Posted by dpryan View Post
This will depend upon how you do your mapping and then the expression quantitation.
I used RNA-seq analysis in CLC genomic workbench.
Set parameters is as below
Minimum length fraction: 0.9
Minimum similarity fraction: 0.8
Maximum number of hits for a read: 10
What is the right way to do the mapping and quantitation for a small subset reference? I really appreciate if you can provide a reference for this. Thank you very much!
JackMetal is offline   Reply With Quote