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Old 09-25-2013, 02:22 AM   #4
not just another member
Location: Belgium

Join Date: Aug 2010
Posts: 264

I don't think it's a good idea. It's always better to map to all the transcript because your data is coming from total RNA ( or poly-A RNA). It can happen that when you map to your subset, some reads maybe map in a better way to transcript that are not in your subset..
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