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Old 09-30-2013, 10:30 PM   #1
Location: Russia, Irkutsk

Join Date: Feb 2011
Posts: 40
Default Finding transmembrane domains

I need to locate transmembrane domains in a protein, so I've run it trough webservers linked at expasy in "Topology prediction" section (SOSUI, TMHMM, HMMTOP, etc.) And you know what? Every single one of them gives me different positions!
What parameters should I estimate to correctly predict these domains? Perhaps some advice on which servers behave better on which taxa?
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