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Old 04-10-2014, 06:41 AM   #5
NicoBxl
not just another member
 
Location: Belgium

Join Date: Aug 2010
Posts: 264
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why do you use a ttest and not DESeq test (based on negative binomial) ? RNA-Seq data do not follow a normal distribution.

for normalized count, you can use also : normalizedCounts <- counts(dds,normalized=TRUE)
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