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Old 06-19-2014, 12:31 AM   #4
hailongcorn
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Location: China

Join Date: May 2014
Posts: 6
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Quote:
Originally Posted by mehtaaditya View Post
Hi everyone
i mapped my high quality reads on my reference genome using Tophat 2.0.7 ver. Now i want to know how many reads fall (mapped) in my exon and intron regions. and how many reads fall in intergenic regions. i stucked this place. Is anybody know how can i get exon intron and intrgenic reads mapping from my mapping file. Any suggestions will appreciate. Thanks in advance.
hello,I want get exon intron and intrgenic file,how can i get this from tophat bam or bed file?Thank you
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