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Old 05-12-2015, 06:59 PM   #4
student-t
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Location: Garvan Institute

Join Date: Mar 2015
Posts: 16
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There're a few solutions to calculating metrics for an assembly.

1. https://github.com/ajmazurie/velvet-stats
2. Biopieces
3.http://korflab.ucdavis.edu/datasets/...athon_stats.pl
4. abyss-fac

I don't recommend 1-3. The documentation is bad, I didn't have the time to go through the source code. Biopieces required a multi-stage workflow, which I think it's a very stupid idea.

Use abyss-fac, don't waste your time. On a Mac, install it via "brew install abyss"
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