View Single Post
Old 07-01-2015, 11:54 AM   #4
swbarnes2
Senior Member
 
Location: San Diego

Join Date: May 2008
Posts: 912
Default

samtools mpileup should also take as a commend line entry a position, or a bed file of positions, so you don't need to generate a line for every base in the genome.
swbarnes2 is offline   Reply With Quote