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Old 11-08-2019, 06:32 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,091
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You could add a "restrictleft=N" N=certain number of bases to look only in that area. Also adding "minlength=N" will exclude small reads like the first example. Also try setting k to something smaller (8) so it has better chances of matching correctly.

I hope "-rcomp=f" is a typo. There should be no - at beginning.

Last edited by GenoMax; 11-08-2019 at 06:44 AM.
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