SEQanswers - View Single Post - Bowtie and reads that failed to align: (100.00%)

swbarnes2 · 02-08-2011, 07:42 PM

Your first read has lousy quality scores, and its best blast to mouse has several discrepancies. That's why it won't align. The second read should align fine.

rs4244385 is a human SNP.

02-08-2011, 07:42 PM	#8
swbarnes2 Senior Member Location: San Diego Join Date: May 2008 Posts: 912	Your first read has lousy quality scores, and its best blast to mouse has several discrepancies. That's why it won't align. The second read should align fine. rs4244385 is a human SNP.