SEQanswers - View Single Post

mgogol · 04-04-2012, 06:30 AM

At UCSC, you can upload a custom track bed file, then use the table browser and do an intersection. You could also do this with galaxy "Fetch Sequences".

On the command line, you have a number of options... bedtools getfasta comes to mind.

04-04-2012, 06:30 AM	#3
mgogol Senior Member Location: Kansas City Join Date: Mar 2008 Posts: 197	At UCSC, you can upload a custom track bed file, then use the table browser and do an intersection. You could also do this with galaxy "Fetch Sequences". On the command line, you have a number of options... bedtools getfasta comes to mind.