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westerman · 10-03-2012, 11:42 AM

I think you will need to tell us more specifically what type of help you need. Since you have the pairwise alignments of each gene in each genome then it should simple to count up the ones in 'common'. Of course 'common' is a nebulous term -- what level of homology and length do you require.

10-03-2012, 11:42 AM	#2
westerman Rick Westerman Location: Purdue University, Indiana, USA Join Date: Jun 2008 Posts: 1,104	I think you will need to tell us more specifically what type of help you need. Since you have the pairwise alignments of each gene in each genome then it should simple to count up the ones in 'common'. Of course 'common' is a nebulous term -- what level of homology and length do you require.