hi all
I am trying to align my illumina's reads using BWA to the human exome
and i am runnig it as defalut parameters ... so i am getting max of 45% of aligned reads ( without any filter on quality or depth )
does anyone have a good combination of parameters for BWA ?
thanks
I am trying to align my illumina's reads using BWA to the human exome
and i am runnig it as defalut parameters ... so i am getting max of 45% of aligned reads ( without any filter on quality or depth )
does anyone have a good combination of parameters for BWA ?
thanks
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