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Old 07-15-2008, 01:40 AM   #4
zee
NGS specialist
 
Location: Malaysia

Join Date: Apr 2008
Posts: 249
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I just noticed this with some of my nucleosome data. With microRNA reads this is what is expected so lots of people do tag counts before mapping their tags, ofcourse expect to lose that quality information.
This week I was trying out the FindPeaks program and it has an option to automatically discard these when you're doing peak detection.
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