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Old 11-12-2013, 08:29 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
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topTags outputs adjusted p-values in the FDR column. The default method is BH, which I think is also the default for p.adjust().

For subsetting either type "help(subset)" or just google "R data frame subset" for other methods.
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