Thread: maq on a mac
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Old 08-09-2008, 12:00 PM   #2
ECO
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Hey there...I would suspect that the "FASTQ" file you have is really solexa's format that is off just a bit. There are some notes on the conversion here:

http://maq.sourceforge.net/fastq.shtml

I think there is a script included sol2sanger.pl that will do that change for you...otherwise someone else will have to jump in.
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