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Old 05-05-2015, 10:40 AM   #1
Location: Midwest

Join Date: Mar 2009
Posts: 30
Default stringtie output has exons instead of transcript annotation


has anyone used stringtie program? I have a genome annotation that mostly has one isoform annotated per gene. I tried to use stringtie to see if it can help get more transcript annotated. However openin the result GTF file in IGV I can only see individual exons. No transcripts whatsoever.

What is your experience? do I need to sepecify certain parameters to make it work?

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