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Old 07-09-2015, 04:39 AM   #2
Location: Naples, Italy

Join Date: Feb 2012
Posts: 50

The output of StringTie should be in GTF format which reports Exons. The 9th column of the output contains name of transcript for each exon. If you visualise the GTF in IGV or some other genome browser you should be able to see the transcript models. Or to simplify you can convert your GTF into BED format using the script attached. The script requires BEDTools to be installed in your computer.
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