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Old 10-18-2010, 06:13 AM   #6
kalidaemon
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Location: Boston

Join Date: Sep 2010
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I feel your pain with R... I've been using MACS, which is a software package from Shirley Liu's group: http://liulab.dfci.harvard.edu/MACS to analyze my ChIP-Seq data and have been really happy with the results. MACS is unix-based so you can avoid R for the time being if you'd like.
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