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Old 12-12-2011, 01:32 AM   #3
Junior Member
Location: Poland

Join Date: Dec 2011
Posts: 7

Originally Posted by Wallysb01 View Post
What do your sequence headers look like and how are your files split up, if at all? I've run into this problem before, and it just required getting the formatting right.
Do you think about header of bam file?
I obtained 28 fastq files from Casava - 14 right-end (R1) 14 left-end (R2).
I have processed them by tophat.
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