Hi all,
I am a new user of an Ion Torrent and we are working on Whole Exome Sequencing (WES). From what I've read so far, GATK is the golden standard for such analysis when it comes to Illumina data BUT that does not apply so much to Ion Torrent data.
Does anyone have experience on WES with Ion Torrent and can help me by proposing software to use for my pipeline, or alterations on the GATK best practice?
Thank you in advance for your time
I am a new user of an Ion Torrent and we are working on Whole Exome Sequencing (WES). From what I've read so far, GATK is the golden standard for such analysis when it comes to Illumina data BUT that does not apply so much to Ion Torrent data.
Does anyone have experience on WES with Ion Torrent and can help me by proposing software to use for my pipeline, or alterations on the GATK best practice?
Thank you in advance for your time
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