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Old 06-06-2019, 03:42 AM   #1
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Location: France

Join Date: Jun 2019
Posts: 3
Default Which PacBio ouputs use to do novo assembly?

Hello, I was given all the outputs of the result of a whole genome sequencing of a bacteria, and there is a lot of them and I donít understand which one of these I should use to do a novo assembly:
  • 3 *.subreads.fastq
  • 3 *.subreads.fasta
  • 3 *.bax.h5
  • 1 *.bas.h5
  • 1 *.mcd.h5
  • 1 *.metadata.xml

I was thinking using SMRT link to do the analysis , but I donít know which one of these I should use.

Thanks in advance.
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