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Old 12-10-2015, 06:29 AM   #2
I like code
Location: San Diego, CA, USA

Join Date: Sep 2009
Posts: 438

MACS or Homer. Homer has a few peak calling modes that control the type and size of peaks it finds. MACS is more of a straight ahead peak caller that just looks for peaks of any width. at least that's how I think of the two.
/* Shawn Driscoll, Gene Expression Laboratory, Pfaff
Salk Institute for Biological Studies, La Jolla, CA, USA */
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