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Old 08-11-2017, 11:28 PM   #4
saupra
Junior Member
 
Location: india

Join Date: Dec 2016
Posts: 4
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Hi,

I am trying to analyze data for factor which does not behave typically as transcription factor. I used macs and homer for peak calling. macs2 is giving me hardly 20-30 peaks while Homer is giving about 20000 peaks. macs2 is not picking up peaks which i can easily visualize in IGV. How can i be sure which peak caller to use and how can I filter peaks from Homer data (based on what criteria)
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