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Old 03-26-2013, 06:33 PM   #1
adaptivegenome
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Location: US

Join Date: Nov 2009
Posts: 437
Default help finding indels, etc. in dbSNP database!

I am grabbing the from the NCBI FTP the dbSNP dataset and I have the files by chromosome that list genome location for the variant but I can't tell if it is SNP, indel, MNP, etc.

Has anyone tried to parse the dbSNP dataset to get this info? Am I grabbing the wrong files?

Any help is greatly appreciated. Ultimately I want a local list of all the dbSNP variants by variant class.

Thanks!!
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