Thread: subread
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Old 06-07-2013, 04:21 AM   #18
shi
Wei Shi
 
Location: Australia

Join Date: Feb 2010
Posts: 235
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Dear sdriscoll and Jon,

Many thanks for your nice comments. We really appreciate you putting up with the bugs and helping us to improve our programs.

As you said, the sam output bug was introduced in v1.3.5. We have fixed it in v1.3.5-p1. We also enhanced the subread-buildindex to let it check the integrity of the provided reference sequences and report any unexpected characters in a more informative way.

The latest version v1.3.5-p1 can be downloaded from http://subread.sourceforge.net . We have done a more thorough test by using much bigger test datasets. Hope it works for you. But please let me know if found any other bugs.

Best wishes,

Wei
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