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Old 07-20-2016, 06:12 PM   #41
jmwhitha
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Location: NC State, Raleigh, NC

Join Date: Mar 2013
Posts: 107
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Does it have to do with my S? http://www-huber.embl.de/users/ander...doc/count.html says that "__no_feature: reads (or read pairs) which could not be assigned to any feature (set S as described above was empty)." I know there are start and stop positions for the GFF3. Are there corresponding start and stop positions in the sam file? If so, what column? I did look at http://genome.sph.umich.edu/wiki/SAM, but I still can't figure out if there is corresponding start and stop info. Thanks again for the help!

http://www-huber.embl.de/users/ander...doc/count.html
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