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Old 12-15-2017, 07:51 AM   #1
JenBarb
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Location: Bethesda, MD

Join Date: Oct 2010
Posts: 47
Default miRNA seed sequence to target zebrafish genome

Hello,
Does anyone have any advice on how I can take a 7mer seed sequence of about 500 miRNAs and run a blast on all zebrafish genes in order to find perfect hits throughout the gene (not just in 3' UTR)...
Would like to generate a list of genes for each miRNA of interest that has a perfect alignment with my 7 seed sequence for that miRNA...

Any advice would be great.

Thanks!
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