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Old 03-10-2020, 01:05 AM   #242
roselaw27
Junior Member
 
Location: China

Join Date: Mar 2020
Posts: 2
Default Trouble parsing header

Dear BBMap team:

I tried to use filterbytile.sh to remove the reads with low quality, but I encountered an error message saying that there was a trouble parsing the header. I've read the description of the script and Brian Bushnell said that was possible when the reads were renamed (such as in SRA) and to contact him if such error happened.

I downloaded the sequencing data (SRA) from ncbi and used fastq-dump to get the fastq files. I wonder if there is a solution to this?

Thank you very much!
Rose
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