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Old 03-02-2011, 06:05 AM   #2
andreitudor
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Location: Quebec

Join Date: Feb 2011
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These sorts of conversions are rather tricky because it is difficult to construct a set of standard conversion decisions that will please everyone's specific demands. VCF to BED/GFF is doable with an awk script. BED and GFF are essentially interchangeable with awk as well. GFF/BED to VCF is not really doable unless the necessary VCF info is already tracked in the BED or GFF.

This is what I found on another forum. I do not think there is a tool that does this for you. I have searched for scripts, but I did not come across any. As it was written is that post, the best way would be to build your own script.

Andrei
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