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Old 03-02-2011, 09:37 AM   #3
cow_girl
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Location: Auckland, NZ

Join Date: Dec 2010
Posts: 6
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I also have been searching for a simple script or tool to convert to gff format to use in SNP annotation, I am wanting to convert xml to gff though. If you are working with the human genome you can download from UCSC genome dbSNP in gff format I'm pretty sure, my problem is I am working with the bovine genome! Here is a link to a sequence converter, unfortunately vcf isn't one of the input formats but it may be useful
http://www-bimas.cit.nih.gov/molbio/readseq/
Cheers

Last edited by cow_girl; 03-02-2011 at 09:38 AM. Reason: typo
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