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Old 03-02-2011, 08:11 PM   #4
Location: India

Join Date: Oct 2010
Posts: 59

If you have vcf file and want to annotate SNP you can use

1) EnsEMBL Variant effect predictor
2) snpEff software

both works with cow, accepts vcf file as input and gives GENEID, transcript ID, protein name.
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