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  • Could I make any RNA folding pages shown with pre-filled sequence in URL?

    It is a odd question, I know, please let me explain it.

    When you do a blast on line, there are two ways:

    1. You go to NCBI Blast website, copy and paste a sequence and click "submit".

    2. You can have a URL containing a sequence like the following one, the resulting page is pre-filled with sequence, No copy&paste required. You just need to click "submit"

    http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?QUERY=ctgcagatcgtgcatagcgtcatgctagtcagtcga&AUTO_FORMAT=Fullauto&FORMAT_TYPE=HTML&PROGRAM=blastn&CLIENT=web&PAGE=Nucleotides


    My question is: are there any RNA folding prediction sites can accept this kind of URL containing sequence? I couldn't find such info in mfold server or Vienna RNA webserver. Thanks a lot

  • #2
    If your intent is to submit multiple jobs to a server why not acquire mfold software license (free for academics) and run the software locally?

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    • #3
      Actually, I don't plan to submit many jobs simultaneously. Maybe several at most. Really appreciate if anybody know how to send sequence in URL for RNA folding estimation.

      Comment


      • #4
        Usually most rna folding servers have a limit to the length of sequence they will fold online, otherwise you can just download the vienna-rna package and just do it yourself, its a real cinch.

        If you still want to do it online, as most servers usually use POST for fetching such data you can write a LWP or Curl script to do the same job for you.

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