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Old 11-07-2009, 05:06 PM   #1
Location: Pennsylvania

Join Date: Nov 2009
Posts: 13
Default BWA input problem

I am a new user for BWA and I have problem with input file. I saw in the manual that I need to put arguement in <out.sai>in aln step and <in.sai> in samse step. I cannot distinguish between in.sai and out.sai here. Are there any one know about this? Thank you.
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