View Single Post
Old 09-29-2014, 11:27 PM   #1
BioKiwi
Member
 
Location: KiwiTeritory

Join Date: Sep 2014
Posts: 19
Default Mate pair distance calculation

Hi

I have two mate pair libraries with 2-3 kb and 6-8 kb inserts from a plant species. The libraries have been sequenced 2x100 cycles. FastQC shows good quality reads with low duplication levels. I do not have a reference genome for the species. I wondering if there is an easy way to check the distance between paired reads to see how many of reads are from the expected fragments sizes.
BioKiwi is offline   Reply With Quote